IL_4V71_065

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

UAGC*GCG

Length

7 nucleotides

Bulged bases

4V71|1|AA|A|1441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_065 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.3137

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

4V71|1|AA|U|1440
4V71|1|AA|A|1441
4V71|1|AA|G|1442
4V71|1|AA|C|1443
*
4V71|1|AA|G|1459
4V71|1|AA|C|1460
4V71|1|AA|G|1461

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BP

50S ribosomal protein L19