IL_4V72_139

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V72|1|BA|A|1938, 4V72|1|BA|U|1944, 4V72|1|BA|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_139 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.346

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V72|1|BA|C|1934
4V72|1|BA|G|1935
4V72|1|BA|A|1936
4V72|1|BA|A|1937
4V72|1|BA|A|1938
4V72|1|BA|U|1939
4V72|1|BA|U|1940
4V72|1|BA|C|1941
4V72|1|BA|C|1942
4V72|1|BA|U|1943
4V72|1|BA|U|1944
4V72|1|BA|G|1945
*
4V72|1|BA|C|1961
4V72|1|BA|C|1962
4V72|1|BA|U|1963
4V72|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA