IL_4V72_153

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GGUG*CAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_153 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2515

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V72|1|BA|G|2396
4V72|1|BA|G|2397
4V72|1|BA|U|2398
4V72|1|BA|G|2399
*
4V72|1|BA|C|2417
4V72|1|BA|A|2418
4V72|1|BA|U|2419
4V72|1|BA|C|2420

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15