IL_4V75_029

3D structure

PDB id

4V75 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

AGU*AUACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V75_029 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.3424

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V75|1|AA|A|596
4V75|1|AA|G|597
4V75|1|AA|U|598
*
4V75|1|AA|A|640
4V75|1|AA|U|641
4V75|1|AA|A|642
4V75|1|AA|C|643
4V75|1|AA|U|644

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AQ

30S ribosomal protein S17