3D structure

PDB id
4V75 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
Experimental method
ELECTRON MICROSCOPY
Resolution
12 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V75_089 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.2743
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V75|1|BA|G|856
4V75|1|BA|G|857
4V75|1|BA|G|858
4V75|1|BA|G|859
4V75|1|BA|U|860
4V75|1|BA|A|861
4V75|1|BA|G|862
*
4V75|1|BA|C|915
4V75|1|BA|G|916
4V75|1|BA|A|917
4V75|1|BA|A|918
4V75|1|BA|U|919
4V75|1|BA|A|920
4V75|1|BA|C|921

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BM
50S ribosomal protein L16
Chain BW
50S ribosomal protein L27
Chain BZ
50S ribosomal protein L30

Coloring options:


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