3D structure

PDB id
4V75 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
Experimental method
ELECTRON MICROSCOPY
Resolution
12 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V75_091 not in the Motif Atlas
Homologous match to IL_5J7L_272
Geometric discrepancy: 0.2926
The information below is about IL_5J7L_272
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

4V75|1|BA|G|864
4V75|1|BA|C|865
4V75|1|BA|A|866
4V75|1|BA|C|867
4V75|1|BA|U|868
*
4V75|1|BA|A|909
4V75|1|BA|A|910
4V75|1|BA|A|911
4V75|1|BA|C|912

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BM
50S ribosomal protein L16

Coloring options:


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