IL_4V76_036

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GGAGUACGG*UUAAAAC

Length

16 nucleotides

Bulged bases

4V76|1|AA|G|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V76_036 not in the Motif Atlas

Homologous match to IL_6CZR_146

Geometric discrepancy: 0.3317

The information below is about IL_6CZR_146

Detailed Annotation

9x7 Sarcin-Ricin with inserted C; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_68633.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V76|1|AA|G|887
4V76|1|AA|G|888
4V76|1|AA|A|889
4V76|1|AA|G|890
4V76|1|AA|U|891
4V76|1|AA|A|892
4V76|1|AA|C|893
4V76|1|AA|G|894
4V76|1|AA|G|895
*
4V76|1|AA|U|904
4V76|1|AA|U|905
4V76|1|AA|A|906
4V76|1|AA|A|907
4V76|1|AA|A|908
4V76|1|AA|A|909
4V76|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12