3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
4V76|1|BA|A|910, 4V76|1|BA|A|911
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V76_091 not in the Motif Atlas
Homologous match to IL_4WF9_033
Geometric discrepancy: 0.3095
The information below is about IL_4WF9_033
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

4V76|1|BA|G|864
4V76|1|BA|C|865
4V76|1|BA|A|866
4V76|1|BA|C|867
4V76|1|BA|U|868
*
4V76|1|BA|A|909
4V76|1|BA|A|910
4V76|1|BA|A|911
4V76|1|BA|C|912

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BM
50S ribosomal protein L16

Coloring options:


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