3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
4V77|1|AA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V77_034 not in the Motif Atlas
Geometric match to IL_4V88_434
Geometric discrepancy: 0.3393
The information below is about IL_4V88_434
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

4V77|1|AA|U|684
4V77|1|AA|G|685
4V77|1|AA|U|686
4V77|1|AA|A|687
4V77|1|AA|G|688
*
4V77|1|AA|C|699
4V77|1|AA|G|700
4V77|1|AA|U|701
4V77|1|AA|A|702
4V77|1|AA|G|703
4V77|1|AA|A|704
4V77|1|AA|G|705
4V77|1|AA|A|706

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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