3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V77_039 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.2943
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_84044.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

4V77|1|AA|G|887
4V77|1|AA|G|888
4V77|1|AA|A|889
4V77|1|AA|G|890
4V77|1|AA|U|891
4V77|1|AA|A|892
4V77|1|AA|C|893
4V77|1|AA|G|894
*
4V77|1|AA|U|905
4V77|1|AA|A|906
4V77|1|AA|A|907
4V77|1|AA|A|908
4V77|1|AA|A|909
4V77|1|AA|C|910

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S ribosomal protein S12

Coloring options:


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