IL_4V77_068

3D structure

PDB id

4V77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V77_068 not in the Motif Atlas

Homologous match to IL_7A0S_001

Geometric discrepancy: 0.2268

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

4V77|1|BA|G|24
4V77|1|BA|U|25
4V77|1|BA|G|26
4V77|1|BA|G|27
4V77|1|BA|A|28
4V77|1|BA|U|29
4V77|1|BA|G|30
*
4V77|1|BA|C|510
4V77|1|BA|U|511
4V77|1|BA|G|512
4V77|1|BA|A|513
4V77|1|BA|A|514
4V77|1|BA|A|515
4V77|1|BA|C|516

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22