IL_4V77_083

3D structure

PDB id

4V77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V77|1|BA|G|801, 4V77|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V77_083 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.2925

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V77|1|BA|G|674
4V77|1|BA|A|675
4V77|1|BA|A|676
4V77|1|BA|A|677
4V77|1|BA|C|678
*
4V77|1|BA|G|799
4V77|1|BA|A|800
4V77|1|BA|G|801
4V77|1|BA|A|802
4V77|1|BA|U|803
4V77|1|BA|A|804
4V77|1|BA|G|805
4V77|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15