IL_4V78_062

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V78|1|AA|A|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V78_062 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3464

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

4V78|1|AA|C|1407
4V78|1|AA|A|1408
4V78|1|AA|C|1409
*
4V78|1|AA|G|1491
4V78|1|AA|A|1492
4V78|1|AA|A|1493
4V78|1|AA|G|1494

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A2

5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'

Chain AL

30S ribosomal protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA