IL_4V78_109

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V78|1|BA|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V78_109 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1391

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V78|1|BA|G|1087
4V78|1|BA|A|1088
4V78|1|BA|A|1089
4V78|1|BA|A|1090
*
4V78|1|BA|U|1101
4V78|1|BA|C|1102

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BI

50S ribosomal protein L11

Chain BM

50S ribosomal protein L16