IL_4V78_166

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V78|1|BA|G|2780, 4V78|1|BA|A|2781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V78_166 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.2408

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V78|1|BA|C|2636
4V78|1|BA|U|2637
4V78|1|BA|G|2638
4V78|1|BA|A|2639
4V78|1|BA|G|2640
*
4V78|1|BA|C|2774
4V78|1|BA|G|2775
4V78|1|BA|A|2776
4V78|1|BA|G|2777
4V78|1|BA|A|2778
4V78|1|BA|U|2779
4V78|1|BA|G|2780
4V78|1|BA|A|2781
4V78|1|BA|G|2782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13