IL_4V79_121

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases (A, C, G, U)

1992G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_121 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.2727

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V79|1|BA|A|1669
4V79|1|BA|C|1670
4V79|1|BA|U|1671
4V79|1|BA|A|1672
4V79|1|BA|G|1673
4V79|1|BA|G|1674
*
4V79|1|BA|C|1990
4V79|1|BA|U|1991
4V79|1|BA|G|1992
4V79|1|BA|U|1993

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14