IL_4V79_146

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

4V79|1|BA|U|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_146 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3284

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V79|1|BA|A|2297
4V79|1|BA|A|2298
4V79|1|BA|U|2299
*
4V79|1|BA|A|2317
4V79|1|BA|G|2318
4V79|1|BA|G|2319
4V79|1|BA|U|2320
4V79|1|BA|U|2321

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18