IL_4V7B_038

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7B_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0702

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V7B|1|AA|G|887
4V7B|1|AA|G|888
4V7B|1|AA|A|889
4V7B|1|AA|G|890
4V7B|1|AA|U|891
4V7B|1|AA|A|892
4V7B|1|AA|C|893
4V7B|1|AA|G|894
*
4V7B|1|AA|U|905
4V7B|1|AA|A|906
4V7B|1|AA|A|907
4V7B|1|AA|A|908
4V7B|1|AA|A|909
4V7B|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12