3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7B_097 not in the Motif Atlas
Homologous match to IL_5J7L_272
Geometric discrepancy: 0.1836
The information below is about IL_5J7L_272
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

4V7B|1|BA|G|864
4V7B|1|BA|C|865
4V7B|1|BA|A|866
4V7B|1|BA|C|867
4V7B|1|BA|U|868
*
4V7B|1|BA|A|909
4V7B|1|BA|A|910
4V7B|1|BA|A|911
4V7B|1|BA|C|912

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BM
50S ribosomal protein L16
Chain BW
50S ribosomal protein L27

Coloring options:


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