IL_4V7C_010

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGAAAC*GUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_010 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3189

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V7C|1|AA|G|127
4V7C|1|AA|G|128
4V7C|1|AA|A|129
4V7C|1|AA|A|130
4V7C|1|AA|A|131
4V7C|1|AA|C|132
*
4V7C|1|AA|G|230
4V7C|1|AA|U|231
4V7C|1|AA|G|232
4V7C|1|AA|C|233
4V7C|1|AA|C|234

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20