IL_4V7C_041

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V7C|1|AA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1758

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V7C|1|AA|G|933
4V7C|1|AA|C|934
4V7C|1|AA|A|935
*
4V7C|1|AA|U|1380
4V7C|1|AA|U|1381
4V7C|1|AA|C|1382
4V7C|1|AA|C|1383
4V7C|1|AA|C|1384

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AW

Transfer RNA; tRNA

Chain AX

mRNA