IL_4V7C_168

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

4V7C|1|BA|A|2163, 4V7C|1|BA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_168 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3339

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4V7C|1|BA|G|2124
4V7C|1|BA|G|2125
4V7C|1|BA|A|2126
4V7C|1|BA|G|2127
4V7C|1|BA|G|2128
*
4V7C|1|BA|C|2160
4V7C|1|BA|C|2161
4V7C|1|BA|G|2162
4V7C|1|BA|A|2163
4V7C|1|BA|C|2164
4V7C|1|BA|C|2165
4V7C|1|BA|U|2166
4V7C|1|BA|U|2167
4V7C|1|BA|G|2168
4V7C|1|BA|A|2169
4V7C|1|BA|A|2170
4V7C|1|BA|A|2171
4V7C|1|BA|U|2172
4V7C|1|BA|A|2173
4V7C|1|BA|C|2174

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1