IL_4V7C_189

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4V7C|1|BA|U|2689, 4V7C|1|BA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_189 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1311

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V7C|1|BA|U|2687
4V7C|1|BA|G|2688
4V7C|1|BA|U|2689
4V7C|1|BA|U|2690
4V7C|1|BA|C|2691
*
4V7C|1|BA|G|2718
4V7C|1|BA|G|2719
4V7C|1|BA|U|2720
4V7C|1|BA|A|2721
4V7C|1|BA|G|2722

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L17

Chain BR

50S ribosomal protein L19