IL_4V7D_008

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_008 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1445

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V7D|1|AA|C|239
4V7D|1|AA|C|240
4V7D|1|AA|A|241
4V7D|1|AA|G|242
4V7D|1|AA|U|243
4V7D|1|AA|A|244
4V7D|1|AA|G|245
*
4V7D|1|AA|C|253
4V7D|1|AA|G|254
4V7D|1|AA|A|255
4V7D|1|AA|A|256
4V7D|1|AA|C|257
4V7D|1|AA|G|258

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L35

Chain AO

50S ribosomal protein L15