IL_4V7D_092

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_092 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5236

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V7D|1|AA|G|2110
4V7D|1|AA|U|2111
4V7D|1|AA|G|2112
4V7D|1|AA|U|2113
4V7D|1|AA|A|2114
4V7D|1|AA|G|2115
4V7D|1|AA|G|2116
4V7D|1|AA|A|2117
4V7D|1|AA|U|2118
4V7D|1|AA|A|2119
4V7D|1|AA|G|2120
*
4V7D|1|AA|C|2178
4V7D|1|AA|C|2179

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BG

30S ribosomal protein S7

Chain BW

Transfer RNA; tRNA