IL_4V7D_113

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_113 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1252

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V7D|1|AA|C|2652
4V7D|1|AA|U|2653
4V7D|1|AA|A|2654
4V7D|1|AA|G|2655
4V7D|1|AA|U|2656
4V7D|1|AA|A|2657
4V7D|1|AA|C|2658
*
4V7D|1|AA|G|2663
4V7D|1|AA|G|2664
4V7D|1|AA|A|2665
4V7D|1|AA|C|2666
4V7D|1|AA|C|2667
4V7D|1|AA|G|2668

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6

Chain BZ

Elongation Factor G