IL_4V7D_115

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4V7D|1|AA|U|2689, 4V7D|1|AA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_115 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1328

The information below is about IL_4WF9_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V7D|1|AA|U|2687
4V7D|1|AA|G|2688
4V7D|1|AA|U|2689
4V7D|1|AA|U|2690
4V7D|1|AA|C|2691
*
4V7D|1|AA|G|2718
4V7D|1|AA|G|2719
4V7D|1|AA|U|2720
4V7D|1|AA|A|2721
4V7D|1|AA|G|2722

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AQ

50S ribosomal protein L17

Chain AS

50S ribosomal protein L19