IL_4V7D_200

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGGGA*UCCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGGGA,UCCCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_200 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3812

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V7D|1|BV|G|27
4V7D|1|BV|G|28
4V7D|1|BV|G|29
4V7D|1|BV|G|30
4V7D|1|BV|A|31
*
4V7D|1|BV|U|39
4V7D|1|BV|C|40
4V7D|1|BV|C|41
4V7D|1|BV|C|42
4V7D|1|BV|C|43

Current chains

Chain BV

tRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BZ

Elongation Factor G