IL_4V7D_216

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGCUGC*GAUGGCC

Length

13 nucleotides

Bulged bases

4V7D|1|AA|A|1981

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_216 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3538

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V7D|1|AA|G|1766
4V7D|1|AA|G|1767
4V7D|1|AA|C|1768
4V7D|1|AA|U|1769
4V7D|1|AA|G|1770
4V7D|1|AA|C|1771
*
4V7D|1|AA|G|1980
4V7D|1|AA|A|1981
4V7D|1|AA|U|1982
4V7D|1|AA|G|1983
4V7D|1|AA|G|1984
4V7D|1|AA|C|1985
4V7D|1|AA|C|1986

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA