IL_4V7E_003
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CCUAGUAAC*GCGAACCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_003 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.3145
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V7E|1|Aa|C|81
4V7E|1|Aa|C|82
4V7E|1|Aa|U|83
4V7E|1|Aa|A|84
4V7E|1|Aa|G|85
4V7E|1|Aa|U|86
4V7E|1|Aa|A|87
4V7E|1|Aa|A|88
4V7E|1|Aa|C|89
*
4V7E|1|Aa|G|95
4V7E|1|Aa|C|96
4V7E|1|Aa|G|97
4V7E|1|Aa|A|98
4V7E|1|Aa|A|99
4V7E|1|Aa|C|100
4V7E|1|Aa|C|101
4V7E|1|Aa|G|102
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L13E
- Chain CN
- 60S ribosomal protein L15E
- Chain CQ
- 60S ribosomal protein L18E
- Chain Ca
- 60S ribosomal protein L15
- Chain Co
- 60S ribosomal protein L44E
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