IL_4V7E_009
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAC*GACCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_009 not in the Motif Atlas
- Homologous match to IL_5TBW_011
- Geometric discrepancy: 0.1995
- The information below is about IL_5TBW_011
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.3
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V7E|1|Aa|G|175
4V7E|1|Aa|A|176
4V7E|1|Aa|C|177
*
4V7E|1|Aa|G|235
4V7E|1|Aa|A|236
4V7E|1|Aa|C|237
4V7E|1|Aa|C|238
4V7E|1|Aa|C|239
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CL
- 60S ribosomal protein L13E
- Chain Ch
- 60S ribosomal protein L29
- Chain Cj
- 60S ribosomal protein L37E
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