IL_4V7E_021

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_021 not in the Motif Atlas

Geometric match to IL_353D_001

Geometric discrepancy: 0.1477

The information below is about IL_353D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V7E|1|Aa|C|462
4V7E|1|Aa|G|463
4V7E|1|Aa|G|464
*
4V7E|1|Aa|C|471
4V7E|1|Aa|U|472
4V7E|1|Aa|G|473

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L30

Chain Cr

60S ribosomal protein L28E