IL_4V7E_027

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAG*CGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_027 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.2106

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V7E|1|Aa|G|728
4V7E|1|Aa|G|729
4V7E|1|Aa|A|730
4V7E|1|Aa|G|731
*
4V7E|1|Aa|C|744
4V7E|1|Aa|G|745
4V7E|1|Aa|C|746
4V7E|1|Aa|A|747
4V7E|1|Aa|C|748

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CQ

60S ribosomal protein L18E

Chain Cb

60S ribosomal protein L29E