IL_4V7E_038

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCU*AAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_038 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2625

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4V7E|1|Aa|G|971
4V7E|1|Aa|C|972
4V7E|1|Aa|U|973
*
4V7E|1|Aa|A|1114
4V7E|1|Aa|A|1115
4V7E|1|Aa|G|1116
4V7E|1|Aa|U|1117

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13E

Chain CQ

60S ribosomal protein L18E

Chain CT

60S ribosomal protein L21E

Chain Ca

60S ribosomal protein L15

Chain Cb

60S ribosomal protein L29E