IL_4V7E_044

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCCAAU*AAAC

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|C|1005

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_044 not in the Motif Atlas

Homologous match to IL_5TBW_040

Geometric discrepancy: 0.1585

The information below is about IL_5TBW_040

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.3

Basepair signature

cWW-cWS-cWW-cWW-R-cSH-tWH-R

Number of instances in this motif group

6

Unit IDs

4V7E|1|Aa|G|1003
4V7E|1|Aa|C|1004
4V7E|1|Aa|C|1005
4V7E|1|Aa|A|1006
4V7E|1|Aa|A|1007
4V7E|1|Aa|U|1008
*
4V7E|1|Aa|A|1050
4V7E|1|Aa|A|1051
4V7E|1|Aa|A|1052
4V7E|1|Aa|C|1053

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ab

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L18

Chain CI

60S ribosomal protein L16

Chain CT

60S ribosomal protein L21E