IL_4V7E_045

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_045 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.2119

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V7E|1|Aa|G|1009
4V7E|1|Aa|A|1010
4V7E|1|Aa|U|1011
4V7E|1|Aa|U|1012
4V7E|1|Aa|A|1013
*
4V7E|1|Aa|U|1045
4V7E|1|Aa|U|1046
4V7E|1|Aa|C|1047
4V7E|1|Aa|U|1048
4V7E|1|Aa|C|1049

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ab

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L18

Chain CI

60S ribosomal protein L16