IL_4V7E_049

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCGGC*GCCGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_049 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3223

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V7E|1|Aa|G|1073
4V7E|1|Aa|C|1074
4V7E|1|Aa|G|1075
4V7E|1|Aa|G|1076
4V7E|1|Aa|C|1077
*
4V7E|1|Aa|G|1089
4V7E|1|Aa|C|1090
4V7E|1|Aa|C|1091
4V7E|1|Aa|G|1092
4V7E|1|Aa|U|1093

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L21E

Chain Cb

60S ribosomal protein L29E