IL_4V7E_054
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGCCCAAC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_054 not in the Motif Atlas
- Homologous match to IL_5TBW_049
- Geometric discrepancy: 0.1761
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Aa|U|1176
4V7E|1|Aa|G|1177
4V7E|1|Aa|C|1178
4V7E|1|Aa|C|1179
4V7E|1|Aa|C|1180
4V7E|1|Aa|A|1181
4V7E|1|Aa|A|1182
4V7E|1|Aa|C|1183
*
4V7E|1|Aa|G|1329
4V7E|1|Aa|A|1330
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L30
- Chain CO
- 60S ribosomal protein L13
- Chain CS
- 60S ribosomal protein L20
- Chain Cf
- 60S ribosomal protein L33E
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