IL_4V7E_057
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAACCCACAAAG*CGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|1200, 4V7E|1|Aa|A|1306, 4V7E|1|Aa|U|1309
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_057 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1665
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Aa|G|1198
4V7E|1|Aa|A|1199
4V7E|1|Aa|A|1200
4V7E|1|Aa|C|1201
4V7E|1|Aa|C|1202
4V7E|1|Aa|C|1203
4V7E|1|Aa|A|1204
4V7E|1|Aa|C|1205
4V7E|1|Aa|A|1206
4V7E|1|Aa|A|1207
4V7E|1|Aa|A|1208
4V7E|1|Aa|G|1209
*
4V7E|1|Aa|C|1303
4V7E|1|Aa|G|1304
4V7E|1|Aa|A|1305
4V7E|1|Aa|A|1306
4V7E|1|Aa|A|1307
4V7E|1|Aa|A|1308
4V7E|1|Aa|U|1309
4V7E|1|Aa|G|1310
4V7E|1|Aa|G|1311
4V7E|1|Aa|A|1312
4V7E|1|Aa|U|1313
4V7E|1|Aa|G|1314
4V7E|1|Aa|G|1315
4V7E|1|Aa|C|1316
4V7E|1|Aa|G|1317
4V7E|1|Aa|C|1318
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ab
- 5S ribosomal RNA; 5S rRNA
- Chain CB
- 60S ribosomal protein L3
- Chain CF
- 60S ribosomal protein L30
- Chain CI
- 60S ribosomal protein L16
- Chain CO
- 60S ribosomal protein L13
- Chain CS
- 60S ribosomal protein L20
- Chain Cm
- 60S ribosomal protein L40E
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