IL_4V7E_071

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_071 not in the Motif Atlas

Homologous match to IL_5TBW_064

Geometric discrepancy: 0.1441

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

4V7E|1|Aa|G|1616
4V7E|1|Aa|A|1617
4V7E|1|Aa|U|1618
4V7E|1|Aa|G|1619
*
4V7E|1|Aa|C|1820
4V7E|1|Aa|G|1821
4V7E|1|Aa|C|1822

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ac

5.8S ribosomal RNA; 5.8S rRNA

Chain Cg

60S ribosomal protein L34E

Chain Ck

60S ribosomal protein L38E