IL_4V7E_076

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

4V7E|1|Aa|C|1775

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_076 not in the Motif Atlas

Homologous match to IL_5TBW_069

Geometric discrepancy: 0.2544

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V7E|1|Aa|C|1666
4V7E|1|Aa|C|1667
*
4V7E|1|Aa|G|1774
4V7E|1|Aa|C|1775
4V7E|1|Aa|G|1776

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain Cg

60S ribosomal protein L34E