IL_4V7E_080

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

4V7E|1|Aa|G|1749

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_080 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.1733

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V7E|1|Aa|U|1691
4V7E|1|Aa|U|1692
4V7E|1|Aa|A|1693
4V7E|1|Aa|A|1694
4V7E|1|Aa|C|1695
*
4V7E|1|Aa|G|1745
4V7E|1|Aa|G|1746
4V7E|1|Aa|A|1747
4V7E|1|Aa|A|1748
4V7E|1|Aa|G|1749
4V7E|1|Aa|A|1750

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Cg

60S ribosomal protein L34E

Chain Ck

60S ribosomal protein L38E