IL_4V7E_087

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

4V7E|1|Aa|A|1927

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_087 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.2015

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|C|1914
4V7E|1|Aa|G|1915
4V7E|1|Aa|U|1916
4V7E|1|Aa|A|1917
4V7E|1|Aa|A|1918
4V7E|1|Aa|C|1919
*
4V7E|1|Aa|G|1924
4V7E|1|Aa|G|1925
4V7E|1|Aa|A|1926
4V7E|1|Aa|A|1927
4V7E|1|Aa|A|1928
4V7E|1|Aa|A|1929
4V7E|1|Aa|G|1930

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain CR

60S ribosomal protein L19E

Chain Cp

60S ribosomal protein L43E