IL_4V7E_105
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_105 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1804
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Aa|U|2206
4V7E|1|Aa|C|2207
4V7E|1|Aa|A|2208
4V7E|1|Aa|A|2209
4V7E|1|Aa|A|2210
4V7E|1|Aa|G|2211
4V7E|1|Aa|U|2212
*
4V7E|1|Aa|A|2223
4V7E|1|Aa|A|2224
4V7E|1|Aa|C|2225
4V7E|1|Aa|C|2226
4V7E|1|Aa|A|2227
4V7E|1|Aa|A|2228
4V7E|1|Aa|G|2229
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein L2
- Chain Ci
- 60S ribosomal protein L36E
Coloring options: