IL_4V7E_107

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4V7E|1|Aa|A|2276, 4V7E|1|Aa|C|2282, 4V7E|1|Aa|C|2301

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_107 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1505

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V7E|1|Aa|C|2272
4V7E|1|Aa|C|2273
4V7E|1|Aa|A|2274
4V7E|1|Aa|A|2275
4V7E|1|Aa|A|2276
4V7E|1|Aa|U|2277
4V7E|1|Aa|G|2278
4V7E|1|Aa|C|2279
4V7E|1|Aa|C|2280
4V7E|1|Aa|U|2281
4V7E|1|Aa|C|2282
4V7E|1|Aa|G|2283
*
4V7E|1|Aa|C|2299
4V7E|1|Aa|G|2300
4V7E|1|Aa|C|2301
4V7E|1|Aa|G|2302

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S ribosomal protein L41E