IL_4V7E_116

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_116 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2644

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4V7E|1|Aa|A|2447
4V7E|1|Aa|G|2448
4V7E|1|Aa|A|2449
*
4V7E|1|Aa|U|2499
4V7E|1|Aa|U|2500
4V7E|1|Aa|U|2501

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ci

60S ribosomal protein L36E

Chain Cz

60S ribosomal protein L1