IL_4V7E_126

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|U|2862

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_126 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.1832

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V7E|1|Aa|G|2830
4V7E|1|Aa|U|2831
4V7E|1|Aa|G|2832
*
4V7E|1|Aa|U|2860
4V7E|1|Aa|U|2861
4V7E|1|Aa|U|2862
4V7E|1|Aa|U|2863
4V7E|1|Aa|U|2864

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CI

60S ribosomal protein L16