IL_4V7E_129

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|G|2947, 4V7E|1|Aa|A|2948

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_129 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1913

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V7E|1|Aa|C|2881
4V7E|1|Aa|U|2882
4V7E|1|Aa|C|2883
*
4V7E|1|Aa|G|2945
4V7E|1|Aa|U|2946
4V7E|1|Aa|G|2947
4V7E|1|Aa|A|2948
4V7E|1|Aa|G|2949

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L14