IL_4V7E_131

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|A|2913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_131 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3605

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7E|1|Aa|U|2893
4V7E|1|Aa|U|2894
4V7E|1|Aa|G|2895
*
4V7E|1|Aa|C|2910
4V7E|1|Aa|C|2911
4V7E|1|Aa|A|2912
4V7E|1|Aa|A|2913
4V7E|1|Aa|G|2914

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6

Chain CO

60S ribosomal protein L13

Chain CV

60S ribosomal protein L14

Chain Cm

60S ribosomal protein L40E