IL_4V7E_139
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CCUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_139 not in the Motif Atlas
- Geometric match to IL_1JBR_001
- Geometric discrepancy: 0.1335
- The information below is about IL_1JBR_001
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
4V7E|1|Aa|C|3019
4V7E|1|Aa|C|3020
4V7E|1|Aa|U|3021
4V7E|1|Aa|A|3022
4V7E|1|Aa|G|3023
4V7E|1|Aa|U|3024
4V7E|1|Aa|A|3025
4V7E|1|Aa|C|3026
*
4V7E|1|Aa|G|3031
4V7E|1|Aa|G|3032
4V7E|1|Aa|A|3033
4V7E|1|Aa|A|3034
4V7E|1|Aa|C|3035
4V7E|1|Aa|C|3036
4V7E|1|Aa|G|3037
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein L3
- Chain CH
- 60S ribosomal protein L6
- Chain CV
- 60S ribosomal protein L14
- Chain Cm
- 60S ribosomal protein L40E
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